| All-time record | Played 2383, Won 1032, Drawn 424, Lost 927 |
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| Record win in all competitions | Windaybank Thistle 7–0 Port Bristol Rovers — 2009/10 Beta League |
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| Record home win in all competitions | Windaybank Thistle 7–0 Port Bristol Rovers — 2009/10 Beta League |
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| Record away win in all competitions | Port Bristol Rovers 1–7 Windaybank Thistle — 2016/17 Alpha League, Courteney Villa 0–6 Windaybank Thistle — 2024/25 FA Cup Second Round Replay |
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| Record win in the league | Windaybank Thistle 7–0 Port Bristol Rovers — 2009/10 Beta League |
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| Record home win in the league | Windaybank Thistle 7–0 Port Bristol Rovers — 2009/10 Beta League |
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| Record away win in the league | Port Bristol Rovers 1–7 Windaybank Thistle — 2016/17 Alpha League |
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| Record loss in all competitions | Windaybank Thistle 0–7 Frotes Juniors — 1988/89 Beta League |
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| Record home loss in all competitions | Windaybank Thistle 0–7 Frotes Juniors — 1988/89 Beta League |
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| Record away loss in all competitions | Port Bristol Rovers 6–0 Windaybank Thistle — 1992/93 FA Cup Third Round, West Heath Rangers 7–1 Windaybank Thistle — 2015/16 Alpha League |
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| Record loss in the league | Windaybank Thistle 0–7 Frotes Juniors — 1988/89 Beta League |
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| Record home loss in the league | Windaybank Thistle 0–7 Frotes Juniors — 1988/89 Beta League |
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| Record away loss in the league | West Heath Rangers 7–1 Windaybank Thistle — 2015/16 Alpha League |
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| Highest scoring game | Windaybank Thistle 4–6 Partizan Warfield — 1980/81 FA Cup Final |
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| Most consecutive league wins | 16 — 2006/07 |
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| Most consecutive league draws | 4 — 1976/77 |
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| Most consecutive league defeats | 11 — 2000/01 |
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| Most consecutive league games without defeat | 26 — 2001/02 |
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| Most consecutive league games without victory | 14 — 1975/76 |
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| Most consecutive home league wins | 22 — 2008/09–2009/10 |
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| Most consecutive home league defeats | 6 — 1974/75–1975/76, 2016/17 |
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| Most consecutive away league wins | 8 — 2006/07 |
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| Most consecutive away league defeats | 16 — 2025/26 |
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| Most consecutive home league games without defeat | 22 — 2008/09–2009/10 |
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| Most consecutive home league games without victory | 11 — 1982/83 |
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| Most consecutive away league games without defeat | 14 — 2000/01–2001/02, 2021/22–2022/23 |
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| Most consecutive away league games without victory | 21 — 2001/02–2002/03 |
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